Table 1 |
||||||
|
Representatives of candidate fungal tRNase Zs used in sequence alignment |
||||||
|
Species# |
Taxonomy |
Protein name |
Form |
Accession Number |
Database |
No. aa+ |
|
|
||||||
|
Ashbya gossypii (Ago) |
Ascomycota |
AgoTrz1 |
tRNase ZL |
NP_984308 |
NCBI |
821 |
|
Aspergillus nidulans (Ani) |
Ascomycota |
AniTrz1 |
tRNase ZL |
ANID_11892.1 |
Broad |
1083 |
|
Candida albicans (Cal) |
Ascomycota |
CalTrz1 |
tRNase ZL |
XP_717703 |
NCBI |
857 |
|
Coccidioides immitis (Cim) |
Ascomycota |
CimTrz1 |
tRNase ZL |
CIHG_00067.1 |
Broad |
962* |
|
Fusarium graminearum (Fgr) |
Ascomycota |
FgrTrz1 |
tRNase ZL |
FGSG_06635.3 |
Broad |
840 |
|
Neurospora crassa (Ncr) |
Ascomycota |
NcrTrz1 |
tRNase ZL |
NCU00232.4 |
Broad |
1099 |
|
Pyrenophora tritici-repentis (Ptr) |
Ascomycota |
PtrTrz1 |
tRNase ZL |
XP_001940780 |
NCBI |
988* |
|
Saccharomyces cerevisiae (Sce) |
Ascomycota |
SceTrz1 |
tRNase ZL |
NP_013005 |
NCBI |
838 |
|
Schizosaccharomyces pombe (Spo) |
Ascomycota |
SpoTrz1 |
tRNase ZL1 |
SPAC1D4.10 |
Broad |
809 |
|
Schizosaccharomyces pombe (Spo) |
Ascomycota |
SpoTrz2 |
tRNase ZL2 |
SPBC3D6.03C |
Broad |
678 |
|
Sclerotinia sclerotiorum (Ssc) |
Ascomycota |
SscTrz1 |
tRNase ZL |
XP_001586541 |
NCBI |
832 |
|
Yarrowia lipolytica (Yli) |
Ascomycota |
YliTrz1 |
tRNase ZL |
XP_500027 |
NCBI |
815 |
|
Cryptococcus neoformans (Cne) |
Basidiomycota |
CneTrz1 |
tRNase ZL |
CNBG_1589.2 |
Broad |
1035 |
|
Malassezia globosa (Mgl) |
Basidiomycota |
MglTrz1 |
tRNase ZL |
XP_001729151 |
NCBI |
1109 |
|
Puccinia graminis (Pgr) |
Basidiomycota |
PgrTrz1 |
tRNase ZL |
PGTG_11198.2 |
Broad |
854 |
|
Spizellomyces punctatus (Spu) |
Chytridiomycota |
SpuTrz2 |
tRNase ZL |
SPPG_00513.2 |
Broad |
799* |
|
Agaricus bisporus (Abi) |
Basidiomycota |
AbiTrz3 |
tRNase ZS |
106812 |
JGI |
376 |
|
Agaricus bisporus (Abi) |
Basidiomycota |
AbiTrz4 |
tRNase ZS |
123256 |
JGI |
469 |
|
Coprinopsis cinerea (Cci) |
Basidiomycota |
CciTrz2 |
tRNase ZS |
CC1G_14603.2 |
Broad |
390 |
|
Coprinopsis cinerea (Cci) |
Basidiomycota |
CciTrz3 |
tRNase ZS |
CC1G_03806.2 |
Broad |
544 |
|
Laccaria bicolor (Lbi) |
Basidiomycota |
LbiTrz2 |
tRNase ZS |
XP_001876619 |
NCBI |
406 |
|
Laccaria bicolor (Lbi) |
Basidiomycota |
LbiTrz3 |
tRNase ZS |
XP_001874963 |
NCBI |
476 |
|
Malassezia globosa (Mgl) |
Basidiomycota |
MglTrz2 |
tRNase ZS |
EDP42443 |
NCBI |
484* |
|
Melampsora laricis-populina (Mla) |
Basidiomycota |
MlaTrz2 |
tRNase ZS |
111950 |
JGI |
473* |
|
Postia placenta (Ppl) |
Basidiomycota |
PplTrz2 |
tRNase ZS |
94043 |
JGI |
386 |
|
Postia placenta (Ppl) |
Basidiomycota |
PplTrz3 |
tRNase ZS |
92595 |
JGI |
483* |
|
Puccinia graminis (Pgr) |
Basidiomycota |
PgrTrz2 |
tRNase ZS |
PGTG_13150.2 |
Broad |
498 |
|
Spizellomyces punctatus (Spu) |
Chytridiomycota |
SpuTrz3 |
tRNase ZS |
SPPG_06028.2 |
Broad |
395 |
|
|
||||||
|
#Species abbreviations used in this study are shown in parentheses. + The number of amino acids in fungal tRNase Zs * Indicates that mispredicted sequences obtained from the databases have been corrected. |
||||||
|
Zhao et al. BMC Evolutionary Biology 2010 10:272 doi:10.1186/1471-2148-10-272 |
||||||
