|
COGs used for the comparative analysis of Maximum Likelihood trees for individual protein families |
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| COG |
speca |
protb |
Name |
|
|
|||
| COG0012 |
40 |
41 |
Predicted GTPase |
| COG0013 |
40 |
40 |
Alanyl-tRNA synthetase |
| COG0016 |
40 |
40 |
Phenylalanyl-tRNA synthetase alpha submit |
| COG0018 |
40 |
41 |
Arginyl-tRNA synthetase |
| COG0020 |
37 |
40 |
Undecaprenyl pyrophosphate synthase |
| COG0048 |
39 |
39 |
Ribosomal protein S12 |
| COG0049 |
40 |
41 |
Ribosomal protein S7 |
| COG0051 |
40 |
40 |
Ribosomal protein S10 |
| COG0052 |
40 |
40 |
Ribosomal protein S2 |
| COG0060 |
40 |
40 |
Isoleucyl-tRNA synthetase |
| COG0061 |
37 |
40 |
Predicted kinase |
| COG0064 |
30 |
30 |
Asp-tRNAAsn/Glu-tRNAGIn amidotransferase B subunit (PET 112 homolog) |
| COG0072 |
40 |
40 |
Phenylalanyl-tRNA synthetase beta subunit |
| COG0080 |
40 |
41 |
Ribosomal protein LI 1 |
| COG0081 |
40 |
40 |
Ribosomal protein LI |
| COG0082 |
33 |
33 |
Chorismate synthase |
| COG0085 |
40 |
40 |
DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in |
| Mjan, Mthe, Aful) |
|||
| COG0087 |
40 |
40 |
Ribosomal protein L3 |
| COG0088 |
40 |
40 |
Ribosomal protein L4 |
| COG0090 |
40 |
40 |
Ribosomal protein L2 |
| COG0091 |
40 |
40 |
Ribosomal protein L22 |
| COG0092 |
40 |
40 |
Ribosomal protein S3 |
| COG0093 |
39 |
39 |
Ribosomal protein LI 4 |
| COG0094 |
40 |
40 |
Ribosomal protein L5 |
| COG0096 |
40 |
40 |
Ribosomal protein S8 |
| COG0097 |
40 |
40 |
Ribosomal protein L6 |
| COG0098 |
40 |
40 |
Ribosomal protein S5 |
| COG0099 |
40 |
40 |
Ribosomal protein S13 |
| COG0100 |
39 |
39 |
Ribosomal protein S11 |
| COG0101 |
38 |
38 |
Pseudouridylate synthase (tRNA psi55) |
| COG0102 |
40 |
40 |
Ribosomal protein LI 3 |
| COG0103 |
40 |
40 |
Ribosomal protein S9 |
| COG0104 |
31 |
31 |
Adenylosuccinate synthase |
| COG0105 |
33 |
33 |
Nucleoside diphosphate kinase |
| COG0126 |
39 |
39 |
3-phosphoglycerate kinase |
| COG0127 |
34 |
35 |
Xanthosine triphosphate pyrophosphatase |
| COG0128 |
33 |
35 |
5-enolpyruvylshikimate-3-phosphate synthase |
| COG0130 |
37 |
37 |
Pseudouridine synthase |
| COG0134 |
30 |
30 |
Indole-3-glycerol phosphate synthase |
| COG0135 |
30 |
30 |
Phosphoribosylanthranilate isomerase |
| COG0143 |
40 |
41 |
Methionyl-tRNA synthetase |
| COG0148 |
39 |
43 |
Enolase |
| COG0149 |
39 |
41 |
Triosephosphate isomerase |
| COG0151 |
30 |
30 |
Phosphoribosylamine-glycine ligase |
| COG0152 |
30 |
32 |
Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase |
| COG0159 |
31 |
31 |
Tryptophan synthase alpha chain |
| COG0162 |
40 |
43 |
Tyrosyl-tRNA synthetase |
| COG0164 |
35 |
35 |
Ribonuclease HII |
| COG0166 |
35 |
35 |
Glucose-6-phosphate isomerase |
| COG0167 |
32 |
37 |
Dihydroorotate dehydrogenase |
| COG0169 |
33 |
39 |
Shikimate 5-dehydrogenase |
| COG0171 |
35 |
37 |
NAD synthase |
| COG0172 |
40 |
40 |
Seryl-tRNA synthetase |
| COG0173 |
30 |
30 |
Aspartyl-tRNA synthetase |
| COG0178 |
31 |
33 |
Excinuclease ATPase submit |
| COG0180 |
40 |
43 |
Tryptophanyl-tRNA synthetase |
| COG0190 |
33 |
33 |
5,10-methylene-tetrahydrofolate dehydrogenase |
| COG0193 |
30 |
30 |
Peptidyl-tRNA hydrolase |
| COG0197 |
40 |
40 |
Ribosomal protein L16/L10E |
| COG0198 |
40 |
40 |
Ribosomal protein L24 |
| COG0200 |
40 |
40 |
Ribosomal protein LI 5 |
| COG0201 |
40 |
41 |
Preprotein translocase subunit SecY |
| COG0202 |
40 |
40 |
DNA-directed RNA polymerase alpha subunit/40 kD subunit |
| COG0203 |
30 |
30 |
Ribosomal protein LI 7 |
| COG0215 |
38 |
39 |
Cysteinyl-tRNA synthetase |
| COG0216 |
30 |
30 |
Protein chain release factor A |
| COG0221 |
31 |
31 |
Inorganic pyrophosphatase |
| COG0222 |
30 |
30 |
Ribosomal protein L7/L12 |
| COG0223 |
30 |
34 |
Methionyl-tRNA formyltransferase |
| COG0231 |
40 |
46 |
Translation elongation factor P/translation initiation factor eIF-5A |
| COG0233 |
30 |
30 |
Ribosome recycling factor |
| COG0237 |
39 |
41 |
Dephospho-CoA kinase |
| COG0242 |
30 |
35 |
N-formylmethionyl-tRNA deformylase |
| COG0244 |
40 |
40 |
Ribosomal protein L10 |
| COG0250 |
40 |
43 |
Transcription antiterminator |
| COG0256 |
40 |
40 |
Ribosomal protein LI 8 |
| COG0258 |
40 |
47 |
5'-3' exonuclease (including N-terminal domain of Poll) |
| COG0261 |
30 |
30 |
Ribosomal protein L21 |
| COG0264 |
30 |
30 |
Translation elongation factor Ts |
| COG0272 |
30 |
31 |
NAD-dependent DNA ligase (contains BRCT domain type II) |
| COG0275 |
30 |
30 |
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell |
| envelope biogenesis |
|||
| COG0284 |
32 |
32 |
Orotidine-5'-phosphate decarboxylase |
| COG0290 |
30 |
30 |
Translation initiation factor IF3 |
| COG0292 |
30 |
30 |
Ribosomal protein L20 |
| COG0294 |
33 |
36 |
Dihydropteroate synthase |
| COG0305 |
30 |
31 |
Replicative DNA helicase |
| COG0313 |
30 |
31 |
Predicted methyltransferases |
| COG0319 |
30 |
30 |
Predicted metal-dependent hydrolase |
| COG0335 |
30 |
30 |
Ribosomal protein LI 9 |
| COG0336 |
30 |
30 |
tRNA-(guanine-N1)-methyltransferase |
| COG0340 |
32 |
34 |
Biotin-(acetyl-CoA carboxylase) ligase |
| COG0343 |
35 |
36 |
Queuine/archaeosine tRNA-ribosyltransferase |
| COG0351 |
31 |
34 |
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
| COG0359 |
30 |
30 |
Ribosomal protein L9 |
| COG0441 |
40 |
43 |
Threonyl-tRNA synthetase |
| COG0442 |
40 |
40 |
Prolyl-tRNA synthetase |
| COG0452 |
32 |
32 |
Phosphopantothenoylcysteine synthetase/decarboxylase |
| COG0461 |
33 |
34 |
Orotate phosphoribosyltransferase |
| COG0462 |
37 |
40 |
Phosphoribosylpyrophosphate synthetase |
| COG0481 |
30 |
30 |
Membrane GTPase LepA |
| COG0495 |
40 |
41 |
Leucyl-tRNA synthetase |
| COG0504 |
38 |
38 |
CTP synthase (UTPammonia lyase) |
| COG0519 |
33 |
33 |
GMP synthase – PP-ATPase domain |
| COG0522 |
40 |
40 |
Ribosomal protein S4 and related proteins |
| COG0525 |
40 |
40 |
Valyl-tRNA synthetase |
| COG0528 |
40 |
40 |
Uridylate kinase |
| COG0532 |
40 |
40 |
Translation initiation factor 2 (GTPase) |
| COG0533 |
40 |
40 |
Metal-dependent proteases with possible chaperone activity |
| COG0536 |
30 |
30 |
Predicted GTPase |
| COG0540 |
30 |
30 |
Aspartate carbamoyltransferase, catalytic chain |
| COG0541 |
40 |
40 |
Signal recognition particle GTPase |
| COG0544 |
30 |
30 |
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
| COG0547 |
30 |
35 |
Anthranilate phosphoribosyltransferase |
| COG0552 |
40 |
40 |
Signal recognition particle GTPase |
| COG0556 |
31 |
31 |
Helicase subunit of the DNA excision repair complex |
| COG0571 |
30 |
30 |
dsRNA-specific ribonuclease |
| COG0573 |
30 |
34 |
ABC-type phosphate transport system, permease component |
| COG0576 |
34 |
35 |
Molecular chaperone GrpE (heat shock protein) |
| COG0581 |
30 |
34 |
ABC-type phosphate transport system, permease component |
| COG0587 |
30 |
35 |
DNA polymerase III alpha subunit |
| COG0597 |
30 |
30 |
Lipoprotein signal peptidase |
| COG0653 |
30 |
32 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) |
| COG0682 |
30 |
30 |
Prolipoprotein diacylglyceryltransferase |
| COG0691 |
30 |
30 |
tmRNA-binding protein |
| COG0706 |
30 |
34 |
Preprotein translocase subunit YidC |
| COG0781 |
30 |
30 |
Transcription termination factor |
| COG0858 |
30 |
30 |
Ribosome-binding factor A |
| COG1160 |
30 |
30 |
Predicted GTPases |
| COG1214 |
30 |
30 |
Inactive homologs of metal-dependent proteases, putative molecular chaperones |
| COG1466 |
30 |
30 |
DNA polymerase III delta subunit |
| COG1488 |
32 |
35 |
Nicotinic acid phosphoribosyltransferase |
| COG2812 |
30 |
30 |
DNA polymerase III, gamma/tau subunits |
|
aNumber of represented species. bNumber of proteins. | |||
Wolf et al. BMC Evolutionary Biology 2001 1:8 doi:10.1186/1471-2148-1-8 |
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