Additional file 3.
Genes that were down- (A, C) or up-regulated (B, D) in Foxl2-null ovaries aged 13.5 dpc through birth compared to age-matched controls. Scores (second column from left) are standard deviations of four parameters for differential expression obtained with the Focus program (see text). A-B: overall ("multiwise") comparison of three developmental stages using linear contrasts with Focus (i.e., 6 genotype × stage conditions). C-D: overlap of the gene lists obtained by three separate pairwise analyses each confined to age-matched conditions (i.e., each developmental stage was analyzed separately; Focus scores were averaged over the three analyses).
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Garcia-Ortiz et al. BMC Developmental Biology 2009 9:36 doi:10.1186/1471-213X-9-36