Table 2 |
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|
Sequence identity matrix for the four different Shroom proteins which have been characterised experimentally. |
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|
Shrooma |
1 |
2 |
3 |
4a |
|
|
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|
1 |
100/NA/100/100b |
11.7/NA/32.9/37.7 |
10.9/NA/29.8/32.9 |
9.5/NA/NA/35.3 |
|
2 |
100/100/100/100 |
25.4/67.5/44.6/68.2 |
20.1/61.0/NA/65.8 |
|
|
3 |
100/100/100/100 |
15.9/63.6/NA/61.6 |
||
|
4a |
100/100/NA/100 |
|||
|
|
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|
a This table makes use of the new nomenclature presented in Table 1. To avoid evolution-based dissimilarity, the human homologues have been used in the analysis. b Percent sequence identity is given in the format global/PDZ/ASD1/ASD2; NA, not applicable. Global sequence identity is based on those residues aligning to hShroom1 residues 1 – 826. The alignments on which this matrix is based were created using ClustalW. They are available upon request. |
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|
Hagens et al. BMC Cell Biology 2006 7:18 doi:10.1186/1471-2121-7-18 |
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