Table 1

Alignment scores of MarvelD3 sequences from different vertebrates

H. sapiens isoform 1 NM_001017967

H. sapiens isoform 2 NM_052858

M. musculus isoform 1 NM_212447

M. musculus isoform 2 NM_028584

C. lupus f. Isoform 1 XM_848243

C. lupus f. Isoform 2 XM_546843

X. laevis Variant A BC_068841

G. gallus Variant A XM_418989

G. gallus Variant B XM_414239


H. sapiens isoform 2 NM_052858

63

100


M. musculus isoform 1 NM_212447

72

40

100


M. musculus isoform 2 NM_028584

43

68

61

100


C. lupus f. Isoform 1 XM_848243

71

39

67

39

100


C. lupus f. Isoform 2 XM_546843

40

69

38

68

61

100


X. laevis Variant A BC_068841

25

43

24

42

23

44

100


G. gallus Variant A XM_418989

30

51

28

48

28

50

44

100


G. gallus Variant B XM_414239

30

24

30

21

28

22

23

24

100


D. rerio Variant A BC_055662

25

40

26

37

23

40

39

31

25


MarvelD3 sequences were retrieved from Genbank and aligned using ClustalW (see Fig. 1 for a selection of the alignments). Indicated are all Genbank accession numbers. The scores reflect percent identity. For mammals, the two alternatively spliced isoforms were used. Two different MarvelD3 genes, variants A and B, exist in chicken. Only variant A was found in X. laevis and zebrafish.

Steed et al. BMC Cell Biology 2009 10:95   doi:10.1186/1471-2121-10-95

Open Data