Table 3

UV-induced genes not present in the CESR at UV30

UV-induced genes not present in the CESR:


Gene name

Annotation


Repair and DNA metabolism

rhp4b

Nucleotide excision repair factor involved in the repair of UV damaged DNA

mus81

Holliday junction resolvase subunit that associates with Eme1p

Metabolism

SPCC132.04c

Similarity to S. cerevisiae Gdh2p, a glutamate dehydrogenase

Transort

SPAC328.09

Similarity to 2-oxodicarboxylate transporter (S. cerevisiae Odc2p

SPCC794.04c

Sugar (and other) transporter family and the major facilitator superfamily

str1

Probable ferrichrome-iron transporter

SPCPB1C11.01

Similarity to S. cerevisiae Mep2p, ammonium transporter family of membrane transporters

SPAC1002.16c

Sugar (and other) transporter family, and the major facilitator superfamily

    SPBC36.02c

Similarity to C. albicans Flu1p, a membrane transporter, major facilitator superfamily

SPBC530.15c

Similarity to S. cerevisiae Tpo3p, a polyamine transport protein

SPBC409.08

Similarity to S. cerevisiae Tpo2p, a polyamine transport protein

SPAC8C9.12c

Similarity to mitochondrial RNA splicing protein 3 (S. cerevisiae Mrs3p), mitochondrial carrier protein family

ptr2-a;ptr2

Similarity to S. cerevisiae Ptr2p, a peptide permease nitrogen-repressible transporter

SPCC569.05c

Major facilitator superfamily, similarity to C. albicans Flu1p

SPBC16A3.17c

Major facilitator superfamily, similarity to S. pombe Fnx1p, transporter required for long-term survival in N starved cells

SPCC2H8.02

Major facilitator superfamily and the sugar (and other) transporter family

SPCC2H8.00

Major facilitator superfamily and the sugar (and other) transporter family, similarity to S. cerevisiae Pho84p

SPCC1183.11

Mechanosensitive ion channel family

Signaling and stress response

SPAC9B6.03

Protein containing a FYVE zinc finger domain, which bind phosphatidylinositol 3-phosphate

gaf2

Iron-sensing transcription factor that binds GATA elements to regulate iron transporter gene transcription

rst2

Transcriptional activator that positively regulates the transcription of ste11 and fbp2

SPBC19C2.13c

Similarity to S. cerevisiae Ncs2p, involved in pseudohyphal growth and cellular response to starvation

pyp1

Protein-tyrosine phosphatase that acts on Sty1p and negatively regulates mitosis

(isa1)

Protein that binds ferredoxin (Etp1p) and contains iron-sulfur clusters

    (cta3)

Probable Ca2+-ATPase, transcription is induced under high salt conditions

Ribosome biogenesis and translation

rrn2

Protein involved in initiation of transcription of rDNA promoter

SPCP1E11.06

Similarity to S. cerevisiae Nsa2p, a nuclear protein involved in ribosome biogenesis, part of the small ribosomal subunit

DNA/RNA binding

SPBP8B7.15c

Zinc knuckle domain, which can bind RNA or DNA in eukaryotes, similarity to S. cerevisiae Mpe1p

cbh2

DNA binding protein, may be involved in chromosome segregation

Others

SPAC323.07c

Member of the MatE family, which are integral membrane proteins

ppr1

Resistance to the L-proline analog AZC, catalyzes acetylation of AZC, homolog of S. cerevisiae Mpr1p

SPAC3H8.09c

Containing an RNA recognition motif, similarity to S. cerevisiae Nab3p

SPBC1773.17c

Containing D-isomer specific 2-hydroxyacid dehydrogenase NAD binding and catalytic domains

SPAPB18E9.04c

Similarity to S. cerevisiae Pry3p, may have a role in mating efficiency

Protein of unknown function

SPAPB18E9.03c

SPNCRNA.101 SPAC18G6.09c SPAPB1A10.06 SPBC19C7.04c SPAC17A5.8

    SPAC23H3.15c

SPCC2H8.01 SPAC8C9.10c


Gene annotations are from GeneDB http://www.genedb.org/genedb/pombe/index.jsp webcite.

SkjĂžlberg et al. BMC Cell Biology 2009 10:87   doi:10.1186/1471-2121-10-87

Open Data