Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Danielle Burgess PhD
BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 9
Proceedings of the Fifth Annual MCBIOS Conference. Systems Biology: Bridging the Omics
Proceedings
from Fifth Annual MCBIOS Conference. Systems Biology: Bridging the Omics
Oklahoma City, OK, USA. 23
24 February 2008
Edited by Jonathan D Wren (Senior Editor), Yuriy Gusev, Dawn Wilkins, Susan Bridges, Stephen Winters-Hilt and James Fuscoe
Introduction
Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference Jonathan D Wren, Dawn Wilkins, James C Fuscoe, Susan Bridges, Stephen Winters-Hilt, Yuriy Gusev BMC Bioinformatics 2008, 9 (Suppl 9):S1 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Proceedings
Validation of an NSP-based (negative selection pattern) gene family identification strategy Ronald L Frank, Cyriac Kandoth, Fikret Ercal BMC Bioinformatics 2008, 9 (Suppl 9):S2 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Exhaustive prediction of disease susceptibility to coding base changes in the human genome Vinayak Kulkarni, Mounir Errami, Robert Barber, Harold R Garner BMC Bioinformatics 2008, 9 (Suppl 9):S3 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells Mikhail G Dozmorov, Kimberly D Kyker, Paul J Hauser, Ricardo Saban, David D Buethe, Igor Dozmorov, Michael B Centola, Daniel J Culkin, Robert E Hurst BMC Bioinformatics 2008, 9 (Suppl 9):S4 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining Tianxiao Huan, Andrey Y Sivachenko, Scott H Harrison, Jake Y Chen BMC Bioinformatics 2008, 9 (Suppl 9):S5 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
MTAP: The Motif Tool Assessment Platform Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali BMC Bioinformatics 2008, 9 (Suppl 9):S6 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data Arun Rawat, Georg J Seifert, Youping Deng BMC Bioinformatics 2008, 9 (Suppl 9):S7 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Systems biology approach to identification of biomarkers for metastatic progression in cancer Andrey A Ptitsyn, Michael M Weil, Douglas H Thamm BMC Bioinformatics 2008, 9 (Suppl 9):S8 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Very Important Pool (VIP) genes Zhenqiang Su, Huixiao Hong, Hong Fang, Leming Shi, Roger Perkins, Weida Tong BMC Bioinformatics 2008, 9 (Suppl 9):S9 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies Leming Shi, Wendell D Jones, Roderick V Jensen, Stephen C Harris, Roger G Perkins, Federico M Goodsaid, Lei Guo, Lisa J Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J Collins, Xiao-hui Fan, Felix W Frueh, et al. BMC Bioinformatics 2008, 9 (Suppl 9):S10 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Large-scale directional relationship extraction and resolution Cory B Giles, Jonathan D Wren BMC Bioinformatics 2008, 9 (Suppl 9):S11 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Hybrid MM/SVM structural sensors for stochastic sequential data Brian Roux, Stephen Winters-Hilt BMC Bioinformatics 2008, 9 (Suppl 9):S12 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Clustering ionic flow blockade toggles with a Mixture of HMMs Alexander Churbanov, Stephen Winters-Hilt BMC Bioinformatics 2008, 9 (Suppl 9):S13 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Time-dependent ARMA modeling of genomic sequences Jerzy S Zielinski, Nidhal Bouaynaya, Dan Schonfeld, William O'Neill BMC Bioinformatics 2008, 9 (Suppl 9):S14 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks Minho Chae, Robert J Shmookler Reis, John J Thaden BMC Bioinformatics 2008, 9 (Suppl 9):S15 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate Christopher A Bottoms, Dong Xu BMC Bioinformatics 2008, 9 (Suppl 9):S16 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming Shi, Roger Perkins, Hong Fang, Joshua Xu, James J Chen, Tao Han, Jim Kaput, James C Fuscoe, Weida Tong BMC Bioinformatics 2008, 9 (Suppl 9):S17 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Comprehensive analysis of circadian periodic pattern in plant transcriptome Andrey Ptitsyn BMC Bioinformatics 2008, 9 (Suppl 9):S18 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
A structural approach for finding functional modules from large biological networks Mutlu Mete, Fusheng Tang, Xiaowei Xu, Nurcan Yuruk BMC Bioinformatics 2008, 9 (Suppl 9):S19 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Proceedings
Testing for treatment effects on gene ontology Taewon Lee, Varsha G Desai, Cruz Velasco, Robert J S Reis, Robert R Delongchamp BMC Bioinformatics 2008, 9 (Suppl 9):S20 (12 [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
BMC Bioinformatics Volumes
24 February 2008
