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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 9 Supplement 11

Proceedings of the BioNLP 08 ACL Workshop: Themes in biomedical language processing

Research

Natural Language Processing in Biomedicine (BioNLP) ACL Workshop 2008

Columbus, OH, USA

19 June 2008

Edited by Dina Demner-Fushman, K Bretonnel Cohen, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii and Bonnie Webber

Conference website

Research   Open Access

Themes in biomedical natural language processing: BioNLP08

Dina Demner-Fushman, Sophia Ananiadou, K Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie Webber BMC Bioinformatics 2008, 9(Suppl 11):S1 (19 November 2008)

Full text | PDF | PubMed

Research   Open Access

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski BMC Bioinformatics 2008, 9(Suppl 11):S2 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Mining clinical relationships from patient narratives

Angus Roberts, Robert Gaizauskas, Mark Hepple, Yikun Guo BMC Bioinformatics 2008, 9(Suppl 11):S3 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Cascaded classifiers for confidence-based chemical named entity recognition

Peter Corbett, Ann Copestake BMC Bioinformatics 2008, 9(Suppl 11):S4 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

How to make the most of NE dictionaries in statistical NER

Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou BMC Bioinformatics 2008, 9(Suppl 11):S5 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Distinguishing the species of biomedical named entities for term identification

Xinglong Wang, Michael Matthews BMC Bioinformatics 2008, 9(Suppl 11):S6 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Disambiguation of biomedical text using diverse sources of information

Mark Stevenson, Yikun Guo, Robert Gaizauskas, David Martinez BMC Bioinformatics 2008, 9(Suppl 11):S7 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Accelerating the annotation of sparse named entities by dynamic sentence selection

Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2008, 9(Suppl 11):S8 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes

Veronika Vincze, György Szarvas, Richárd Farkas, György Móra, János Csirik BMC Bioinformatics 2008, 9(Suppl 11):S9 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

Halil Kilicoglu, Sabine Bergler BMC Bioinformatics 2008, 9(Suppl 11):S10 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Automatic inference of indexing rules for MEDLINE

Aurélie Névéol, Sonya E Shooshan, Vincent Claveau BMC Bioinformatics 2008, 9(Suppl 11):S11 (19 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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