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BMC Bioinformatics

Supplements

Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Danielle Burgess PhD



BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 1
Asia Pacific Bioinformatics Network (APBioNet) Sixth International Conference on Bioinformatics (InCoB2007)
Proceedings
from Sixth International Conference on Bioinformatics (InCoB2007)
Hong Kong. 2730 August 2007
Edited by Shoba Ranganathan, Michael Gribskov and Tin Wee Tan

Introduction
Bioinformatics research in the Asia Pacific: a 2007 update
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
BMC Bioinformatics 2008, 9(Suppl 1):S1 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings
SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions
Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin, Jong Bhak
BMC Bioinformatics 2008, 9(Suppl 1):S2 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles
Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu
BMC Bioinformatics 2008, 9(Suppl 1):S3 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Madhavi Ganapathiraju, N Balakrishnan, Raj Reddy, Judith Klein-Seetharaman
BMC Bioinformatics 2008, 9(Suppl 1):S4 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Towards ontology-driven navigation of the lipid bibliosphere
Christopher JO Baker, Rajaraman Kanagasabai, Wee Tiong Ang, Anitha Veeramani, Hong-Sang Low, Markus R Wenk
BMC Bioinformatics 2008, 9(Suppl 1):S5 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang, Qingming Luo, Yixue Li
BMC Bioinformatics 2008, 9(Suppl 1):S6 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses
Olivo Miotto, Tin Wee Tan, Vladimir Brusic
BMC Bioinformatics 2008, 9(Suppl 1):S7 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays
Shu-Hwa Chen, Chen-Zen Lo, Ming-Chi Tsai, Chao A Hsiung, Chung-Yen Lin
BMC Bioinformatics 2008, 9(Suppl 1):S8 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments
Hongya Zhao, Kwok-Leung Chan, Lee-Ming Cheng, Hong Yan
BMC Bioinformatics 2008, 9(Suppl 1):S9 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches
Shivashankar H Nagaraj, Robin B Gasser, Alasdair J Nisbet, Shoba Ranganathan
BMC Bioinformatics 2008, 9(Suppl 1):S10 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Analyzing the simplicial decomposition of spatial protein structures
Rafael rdg, Zoltn Szabadka, Vince Grolmusz
BMC Bioinformatics 2008, 9(Suppl 1):S11 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Improved general regression network for protein domain boundary prediction
Paul D Yoo, Abdur R Sikder, Bing Bing Zhou, Albert Y Zomaya
BMC Bioinformatics 2008, 9(Suppl 1):S12 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Functional site prediction selects correct protein models
Vijayalakshmi Chelliah, William R Taylor
BMC Bioinformatics 2008, 9(Suppl 1):S13 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Modelling the structures of G protein-coupled receptors aided by three-dimensional validation
Siavoush Dastmalchi, W Bret Church, Michael B Morris
BMC Bioinformatics 2008, 9(Suppl 1):S14 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage
Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan
BMC Bioinformatics 2008, 9(Suppl 1):S15 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors
Naveena Yanamala, Kalyan C Tirupula, Judith Klein-Seetharaman
BMC Bioinformatics 2008, 9(Suppl 1):S16 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Stability of the core domain of p53: insights from computer simulations
Arumugam Madhumalar, Derek John Smith, Chandra Verma
BMC Bioinformatics 2008, 9(Suppl 1):S17 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis
Olivo Miotto, AT Heiny, Tin Wee Tan, J Thomas August, Vladimir Brusic
BMC Bioinformatics 2008, 9(Suppl 1):S18 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
Guang Lan Zhang, Asif M Khan, Kellathur N Srinivasan, AT Heiny, KX Lee, Chee Keong Kwoh, J Thomas August, Vladimir Brusic
BMC Bioinformatics 2008, 9(Suppl 1):S19 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
Woo-Yeon Kim, Sungsoo Kang, Byoung-Chul Kim, Jeehyun Oh, Seongwoong Cho, Jong Bhak, Jong-Soon Choi
BMC Bioinformatics 2008, 9(Suppl 1):S20 (13February2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

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