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Evidences for protein – GO annotation associations in text for Set 3. Comparing newly predicted GO terms (Set 3a) and known GO terms (Set 3b) from UniProtKb/Swiss-Prot with protein – GO annotation associations in Medline using different extraction criteria. |
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| Extraction criteria |
GO term Set |
Recall |
|
|
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| Exact & Species |
predicted GO terms |
19/88 (22%) |
| known GO terms |
129/283 (46%) |
|
| Relative & Species |
predicted GO terms |
21/88 (24%) |
| known GO terms |
164/283 (58%) |
|
| Exact |
predicted GO terms |
31/88 (35%) |
| known GO terms |
201/283 (71%) |
|
| Relative |
new GO terms |
34/88 (39%) |
| known GO terms |
234/283 (82%) |
|
Jaeger et al. BMC Bioinformatics 2008 9(Suppl 8):S2 doi:10.1186/1471-2105-9-S8-S2 |
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