Table 1

Pathways involved in the HIV-VLPs-induced PBMCs. The pathways are derived from the BioCarta through the Cancer Genome Anatomy Project at http://cgap.nci.nih.gov/Pathways/BioCarta_Pathways webcite. Genes with at least a 1.5-fold modulation (up or downregulation) have been taken into consideration.

Pathways

VLP vs PBS Up-regulated

Pathways

VLP vs PBS Down-regulated

Antigen processing and presentation

CTSL

ECM-receptor interaction

CD36

Cell cycle, proliferation, cell death

IL3RA
SMOX
BCL2
G0S2
IER3

Cytokine-cytokine receptor interaction

IL1R2

Cell shape & extracellular matrix

SERPINB2
LIMK2

Chaperones modulate interferon Signaling Pathway

HSPA7

Chemokine and cytokines

IL6
PBFE1
PBX3

Cytokine Network

IL1-A
IL1-B

Cytokine-cytokine receptor interaction

CCL18
CCL20
CCL7
CXCL1
CXCL2
CXCL3
CXCL6
CXCL13
INHBA

Immune response

ACTN1

Membrane proteins

AQP9
EMR1
SLC25A37
SLCO4A1

Transcription

MAD

Selective expression of chemokine receptors during T-cell polarization/Toll-like receptor signaling pathway

CCL4 (MIP1β)
CCL3 (MIP 1α)
IL8


Buonaguro et al. BMC Bioinformatics 2008 9(Suppl 2):S5   doi:10.1186/1471-2105-9-S2-S5

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