BMC Bioinformatics

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This article is part of the supplement: Italian Society of Bioinformatics (BITS): Annual Meeting 2007

Open Access

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

Gabriele Ausiello*, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via and Manuela Helmer-Citterich

BMC Bioinformatics 2008, 9(Suppl 2):S2 doi:10.1186/1471-2105-9-S2-S2

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Research article   Open Access Highly Accessed

Mining protein loops using a structural alphabet and statistical exceptionality

Leslie Regad, Juliette Martin, Gregory Nuel, Anne-Claude Camproux BMC Bioinformatics 2010, 11:75 (4 February 2010)

Methodology article   Open Access Highly Accessed

Structural motifs recurring in different folds recognize the same ligand fragments

Gabriele Ausiello, Pier Gherardini, Elena Gatti, Ottaviano Incani, Manuela Helmer-Citterich BMC Bioinformatics 2009, 10:182 (15 June 2009)

Software   Open Access Highly Accessed

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs

Micah Hamady, Jeremy Widmann, Shelley D Copley, Rob Knight Genome Biology 2008, 9:R128 (15 August 2008)

MotifCluster finds related motifs in a set of sequences and clusters the sequences into families using the motifs they contain.