Table 2

methods

category

number of modules

average module size

-log(p)


functional flow pattern

flow-based

14

11.20

5.41

edge-betweenness

hierarchical

43

9.67

4.62

clique percolation

density-based

16

6.94

4.63


Accuracy comparison of the methods for functional module detection in protein interaction networks. The flow-pattern clustering approach had approximately 20% higher accuracy than the other methods.

Cho et al. BMC Bioinformatics 2008 9(Suppl 10):O1   doi:10.1186/1471-2105-9-S10-O1

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