This article is part of the supplement: Asia Pacific Bioinformatics Network (APBioNet) Sixth International Conference on Bioinformatics (InCoB2007)
Proceedings
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches
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* Corresponding author: Shoba Ranganathan shoba.ranganathan@mq.edu.au
1 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
2 Department of Veterinary Science, The University of Melbourne, Werribee, VIC 3030, Australia
3 Parasitology Division, Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, EH26 0PZ, UK
4 Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 119260
BMC Bioinformatics 2008, 9(Suppl 1):S10 doi:10.1186/1471-2105-9-S1-S10
Published: 13 February 2008Additional files
Additional file 1:
Comparison of 696 rESTs from Trichostrongylus vitrinus with Caenorhabditis elegans proteome (Wormpep v 167). The table also provides corresponding RNAi phenotypic information.
Format: DOC Size: 197KB Download file
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Additional file 2:
Gene Ontology mappings for Trichostrongylus vitrinus rESTs.
Format: DOC Size: 233KB Download file
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Additional file 3:
Metabolic pathways in Trichostrongylus vitrinus mapped by Kyoto Encyclopedia of Genes and Genomes (KEGG).
Format: DOC Size: 147KB Download file
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Additional file 4:
An example output for functional classification of ESTs generated using the Blast2GO component of ESTEXplorer's Phase II – Nucleotide-level Analysis.
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Additional file 5:
Comparison of individual EST analysis via BLAST searches and ensemble annotation by ESTExplorer.
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Additional file 6:
Validation of Caenorhabditis elegans smat file used for ESTScan by BLASTX results for untranslated EST sequences.
Format: XLS Size: 17KB Download file
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