|
Tight Cluster Results 2 |
||
| LymphNode (A2iii in Additional file 1) |
OOB error(%) |
Number of probes |
|
|
||
| beta_Alanine_metabolism |
16.08 |
42 |
| Alanine_and_aspartate_metabolism |
16.78 |
42 |
| Glutamate_metabolism |
16.08 |
50 |
| Butanoate_metabolism |
16.08 |
59 |
| Propanoate_metabolism |
17.83 |
59 |
| Valine_leucine_and_isoleucine_degradation |
14.69 |
71 |
| Gene Symbols of informative genes in this pathway cluster |
||
| ABAT, ALDH1A3, GLUL, GMPS, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1 |
||
|
|
||
| p53 (A3ii in Additional file 1) |
||
| Alanine_and_aspartate_metabolism |
17.53 |
42 |
| Butanoate_metabolism |
15.54 |
59 |
| Propanoate_metabolism |
18.33 |
59 |
| GM-Glycolysis_and_Gluconeogenesis |
23.11 |
66 |
| Valine_leucine_and_isoleucine_degradation |
15.54 |
71 |
| Gene Symbols of informative genes in this pathway cluster |
||
| ABAT, ALDH1A3, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1 |
||
|
|
||
| Consort (A1i in Additional file 1) |
||
| Glycosphingolipid_biosynthesis |
23.23 |
34 |
| BC-GATA3_participate_in_activating_the_Th2_cytokine |
14.14 |
43 |
| Butanoate_metabolism |
15.15 |
82 |
| Propanoate_metabolism |
21.21 |
85 |
| Valine_leucine_and_isoleucine_degradation |
17.17 |
25 |
| Gene Symbols of informative genes in this pathway cluster |
||
| ABAT, GATA3, HSD17B4, MCCC2, PRKAR1B |
||
|
The bold pathways are those with low OOB error rates | ||
Pang and Zhao BMC Bioinformatics 2008 9:87 doi:10.1186/1471-2105-9-87 |
||