Table 5

Distance between Automatic Partitions and SCOP fold Partition

Automatic Partition

Maximum Δ-distance to Others*

Δ-distance to SCOP*

FPR (%)

TPR (%)


VNS

51

65

0.5

53

SNS

51

65

0.7

59

DNS

48

66

0.5

54

VPS

56

71

0.8

55

SZS

51

69

0.5

51

DZS

49

63

0.6

60

VNL

51

75

1.5

54

SNL

56

84

1.6

55

DNL

53

73

1.1

56

VPL

56

83

1.6

53

SZL

56

70

1.1

56

DZL

56

91

1.9

54


Automatic partitions are identified by three letter code used in table 3.

"Others" refers to other automatic partitions.

*Δ-distance, as defined in Methods, in 1000s.

FPR (%) – False Positive Rate (Methods, Eq. 4)

TPR (%) – True Positive Rate (Methods, Eq. 6)

Sam et al. BMC Bioinformatics 2008 9:74   doi:10.1186/1471-2105-9-74

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