Proceedings  

Predicting glioblastoma prognosis networks using weighted gene co-expression network analysis on TCGA data

Yang Xiang, Cun-Quan Zhang, Kun Huang BMC Bioinformatics 2012, 13(Suppl 2):S12 (13 March 2012)

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Software  

Structural Measures for Network Biology Using QuACN

Laurin AJ Mueller, Karl G Kugler, Armin Graber, Frank Emmert-Streib, Matthias Dehmer BMC Bioinformatics 2011, 12:492 (24 December 2011)

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Research article  

Genetic architecture of gene expression in ovine skeletal muscle

Lisette JA Kogelman, Keren Byrne, Tony Vuocolo, Nathan S Watson-Haigh, Haja N Kadarmideen, James W Kijas, Hutton V Oddy, Graham E Gardner, Cedric Gondro, Ross L Tellam BMC Genomics 2011, 12:607 (15 December 2011)

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Proceedings  

Liverome: a curated database of liver cancer-related gene signatures with self-contained context information

Langho Lee, Kai Wang, Gang Li, Zhi Xie, Yuli Wang, Jiangchun Xu, Shaoxian Sun, David Pocalyko, Jong Bhak, Chulhong Kim, Kee-Ho Lee, Ye Jang, Young Yeom, Hyang-Sook Yoo, Seungwoo Hwang BMC Genomics 2011, 12(Suppl 3):S3 (30 November 2011)

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Methodology article  

Strategies for aggregating gene expression data: The collapseRows R function

Jeremy A Miller, Chaochao Cai, Peter Langfelder, Daniel H Geschwind, Sunil M Kurian, Daniel R Salomon, Steve Horvath BMC Bioinformatics 2011, 12:322 (4 August 2011)

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Research  

Association between plasma metabolites and gene expression profiles in five porcine endocrine tissues

Bin Yang, Anna Bassols, Yolanda Saco, Miguel Pérez-Enciso Genetics Selection Evolution 2011, 43:28 (25 July 2011)

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Research article  

Differential C3NET reveals disease networks of direct physical interactions

Gökmen Altay, Mohammad Asim, Florian Markowetz, David E Neal BMC Bioinformatics 2011, 12:296 (21 July 2011)

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Research article  

Protein expression based multimarker analysis of breast cancer samples

Angela P Presson, Nam K Yoon, Lora Bagryanova, Vei Mah, Mohammad Alavi, Erin L Maresh, Ayyappan K Rajasekaran, Lee Goodglick, David Chia, Steve Horvath BMC Cancer 2011, 11:230 (8 June 2011)

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Research article  

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

W Walter Lorenz, Rob Alba, Yuan-Sheng Yu, John M Bordeaux, Marta Simões, Jeffrey FD Dean BMC Genomics 2011, 12:264 (24 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings  

Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development

Martin Ehler, Vinodh N Rajapakse, Barry R Zeeberg, Brian P Brooks, Jacob Brown, Wojciech Czaja, Robert F Bonner BMC Proceedings 2011, 5(Suppl 2):S3 (28 April 2011)

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Research article  

Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background

Simone de Jong, Tova F Fuller, Esther Janson, Eric Strengman, Steve Horvath, Martien JH Kas, Roel A Ophoff BMC Genomics 2010, 11:20 (11 January 2010)

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Research article  

Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

Christiaan GJ Saris, Steve Horvath, Paul WJ van Vught, Michael A van Es, Hylke M Blauw, Tova F Fuller, Peter Langfelder, Joseph DeYoung, John HJ Wokke, Jan H Veldink, Leonard H van den Berg, Roel A Ophoff BMC Genomics 2009, 10:405 (27 August 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Short Report  

Network module detection: Affinity search technique with the multi-node topological overlap measure

Ai Li, Steve Horvath BMC Research Notes 2009, 2:142 (20 July 2009)

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Research article  

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

Mike J Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath BMC Genomics 2009, 10:327 (20 July 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central