Additional file 2.
Detailed ProfileGrid of the RecA protein family. The frequency values were calculated from the 300 RecA sequences over the full length (352 residues) of the E. coli RecA homolog (top sequence) that determines the position numbering. The "Major" summary line is the 187 residues conserved above a 70% majority threshold. The 12 RecA family motifs are boxed and labeled (as in Additional file 1) while the connecting variable regions are only labeled. Frequency values are shaded in the ranges of 50 to 69% (light gray), 70 to 89% (dark gray), and 90 to 100% (black). Since we anticipate updating the analysis in the future, this is version 1.0 of the RecA ProfileGrid.
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Roca et al. BMC Bioinformatics 2008 9:554 doi:10.1186/1471-2105-9-554