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nGASP – the nematode genome annotation assessment project

Avril Coghlan†, Tristan J Fiedler†, Sheldon J McKay, Paul Flicek, Todd W Harris, Darin Blasiar, the nGASP Consortium and Lincoln D Stein*

  • * Corresponding author: Lincoln D Stein lstein@cshl.edu

  • † Equal contributors

BMC Bioinformatics 2008, 9:549 doi:10.1186/1471-2105-9-549

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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt, Mark Yandell BMC Bioinformatics 2011, 12:491 (22 December 2011)

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Next generation genome annotation with mGene.ngs

Jonas Behr, Regina Bohnert, Georg Zeller, Gabriele Schweikert, Lisa Hartmann, Gunnar Rätsch BMC Bioinformatics 2010, 11(Suppl 10):O8 (7 December 2010)

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A standard variation file format for human genome sequences

Martin G Reese, Barry Moore, Colin Batchelor, Fidel Salas, Fiona Cunningham, Gabor T Marth, Lincoln Stein, Paul Flicek, Mark Yandell, Karen Eilbeck Genome Biology 2010, 11:R88 (26 August 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The genome variation format (GVF) and the 10Gen dataset provide a resource for the standardization of variant files and data analysis.

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