Promoter predictions supported by CAGE tags. We compared the number of predicted promoters supported by CAGE tags when changing the minimum number of CAGE tags found within 2.5 kb from the predicted TSSs. We compared the results when the HMM method made same number of predictions as the profile-based method (untreated cells: 198 predicted sites, treated cells: 208 predicted sites).
Won et al. BMC Bioinformatics 2008 9:547 doi:10.1186/1471-2105-9-547