A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data

doi:10.1186/1471-2105-9-537

BMC Bioinformatics
Volume 9

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Methodology article

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data

Fan Mo^*¹ , Xu Hong^*¹ , Feng Gao² , Lin Du³ , Jun Wang¹ , Gilbert S Omenn⁴^,5 and Biaoyang Lin¹

¹Systems Biology Division, Zhejiang-California Nanosystems Institute (ZCNI) of Zhejiang University, Zhejiang University Huajiachi Campus, 268 Kaixuan Road, Hangzhou 310029, PR China

²Department of General Surgery, The Second Affiliated Hospital, ShanXi Medical University, 382 Wuyi Road, Taiyuan 030000, PR China

³College of Life Science, Zhejiang University Zijingang Campus, Zijinhua Road, Hangzhou 310058, PR China

⁴Center for Computational Medicine and Biology, National Center for Integrative Biomedical Informatics, University of Michigan, 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218, USA.

⁵Departments of Internal Medicine and Human Genetics, University of Michigan, 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218, USA

author email corresponding author email* Contributed equally

BMC Bioinformatics 2008, 9:537doi:10.1186/1471-2105-9-537


Published:	16 December 2008

Additional files

Additional file 1:

Putative novel splicing peptides identified by our approach.

Format: XLS Size: 468KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

A bar chart showing the statistics of the number of skipped exons for the exon-skipping events we identified..

Format: TIFF Size: 1.8MB Download file

Additional file 3:

Illustration of the exon phases.

Format: TIFF Size: 28KB Download file