Table 3

Gene-centered data sources for Gene Prospector.

Name

URL


Gene-centered


Entrez Gene

http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene webcite

Ensembl Human

http://www.ensembl.org/Homo_sapiens/index.html webcite

Swiss-Prot

http://ca.expasy.org/sprot/ webcite

AceView

http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?human webcite

HuGE Navigator

http://www.hugenavigator.net/HuGENavigator/startPagePedia.do webcite

OMIM

http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim webcite

GeneCards®

http://www.genecards.org/index.shtml webcite

Genetics Home Reference

http://ghr.nlm.nih.gov/BrowseGenes webcite

SOURCE

http://source.stanford.edu/cgi-bin/source/sourceSearch webcite

PubMed

http://www.ncbi.nlm.nih.gov/sites/entrez/ webcite

Literature

HuGE Navigator

http://www.hugenavigator.net/HuGENavigator/startPagePubLit.do webcite

Genetic Association Database

http://geneticassociationdb.nih.gov/ webcite

Pharmacogenetics

PharmGKB

http://www.pharmgkb.org/index.jsp webcite

Variation/Prevalence

dbSNP

http://www.ncbi.nlm.nih.gov/sites/entrez webcite

dbSNP-Genotype

http://www.ncbi.nlm.nih.gov/SNP/GeneGt.cgi? webcite

dbSNP-GeneView

http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?locusId= webcite

ALFRED

http://alfred.med.yale.edu/alfred/index.asp webcite

SNPper

http://snpper.chip.org/bio/snpper-enter-gene webcite

Human Gene Mutation Database

http://www.hgmd.cf.ac.uk/ac/index.php webcite

International HapMap Project

http://snp.cshl.org/index.html webcite

The Cancer Genome Anatomy Project

http://cgap.nci.nih.gov/ webcite

Pathway

Kyoto Encyclopedia of Genes and Genomes

http://www.genome.jp/kegg/genes.html webcite

BioCarta

http://www.biocarta.com/genes/index.asp webcite

Pathway Interaction Database

http://pid.nci.nih.gov/PID/index.shtml webcite

Microarray

NCBI Gene Expression Omnibus

http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=geo&term webcite

Miscellaneous

NCBI Bookshelf

http://www.ncbi.nlm.nih.gov/sites/entrez?db=books webcite

NCBI Gene Ontology Database

http://www.geneontology.org/ webcite

GeneTests

http://www.geneclinics.org webcite


Yu et al. BMC Bioinformatics 2008 9:528   doi:10.1186/1471-2105-9-528

Open Data