Compo: composite motif discovery using discrete models

doi:10.1186/1471-2105-9-527

BMC Bioinformatics

Volume 9

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Methodology article

Compo: composite motif discovery using discrete models

Geir Kjetil Sandve¹^,4 , Osman Abul² and Finn Drabløs³

¹Department of Computer and Information Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

²Department of Computer Engineering, TOBB University of Economics and Technology, Ankara, Turkey

³Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

⁴Department of Informatics, University of Oslo, Norway

author email corresponding author email

BMC Bioinformatics 2008, 9:527doi:10.1186/1471-2105-9-527


Published:	8 December 2008

Additional files

Additional file 1:

Additional formulas and experimentation details. Further details on pruning of search space and computation of hit-probability, as well as details on the experimental setup.

Format: PDF Size: 81KB Download file

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Additional file 2:

Binding sites in muscle data set. A visualization of annotated binding sites in the muscle data set [26].

Format: PDF Size: 35KB Download file

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Additional file 3:

Binding sites in liver data set. A visualization of annotated binding sites in the liver data set [27].

Format: PDF Size: 22KB Download file

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