BMC Bioinformatics

official impact factor 3.03

Open Access Methodology article

Compo: composite motif discovery using discrete models

Geir K Sandve1,4*, Osman Abul2 and Finn Drabløs3

Author Affiliations

1 Department of Computer and Information Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

2 Department of Computer Engineering, TOBB University of Economics and Technology, Ankara, Turkey

3 Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

4 Department of Informatics, University of Oslo, Norway

For all author emails, please log on.

BMC Bioinformatics 2008, 9:527 doi:10.1186/1471-2105-9-527

Published: 8 December 2008

Additional files

Additional file 1:

Additional formulas and experimentation details. Further details on pruning of search space and computation of hit-probability, as well as details on the experimental setup.

Format: PDF Size: 81KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Binding sites in muscle data set. A visualization of annotated binding sites in the muscle data set [26].

Format: PDF Size: 35KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Binding sites in liver data set. A visualization of annotated binding sites in the liver data set [27].

Format: PDF Size: 22KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data