Table 3 |
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|
High SGPC pairs, lung |
|||||
|
Affy HGU95 ID |
Gene symbol |
KEGG ID |
Pathway description |
SGPC |
p |
|
|
|||||
|
38835_at |
TM9SF1 |
00900 |
Terpenoid biosynthesis |
0.621 |
5e-04 |
|
41129_at |
TMEM41B |
00900 |
Terpenoid biosynthesis |
0.603 |
0.0017 |
|
39405_at |
UTP14C |
00900 |
Terpenoid biosynthesis |
0.58 |
0.0015 |
|
32150_at |
GOLGA4 |
00900 |
Terpenoid biosynthesis |
0.558 |
0.0049 |
|
1394_at |
RHOA |
00900 |
Terpenoid biosynthesis |
0.534 |
0.0039 |
|
326_i_at |
RPS20* |
03010 |
Ribosome |
0.507 |
0.0015 |
|
39009_at |
LSM3 |
03050 |
Proteasome |
0.484 |
0.0053 |
|
37748_at |
KIAA0232 |
00900 |
Terpenoid biosynthesis |
0.477 |
0.0022 |
|
33859_at |
SAP18 |
00900 |
Terpenoid biosynthesis |
0.463 |
0.0072 |
|
31853_at |
EED |
03050 |
Proteasome |
0.462 |
0.0105 |
|
38668_at |
GPATCH8 |
00900 |
Terpenoid biosynthesis |
0.461 |
0.0064 |
|
40140_at |
RNF103 |
00900 |
Terpenoid biosynthesis |
0.456 |
0.0077 |
|
34326_at |
COPB1 |
00900 |
Terpenoid biosynthesis |
0.45 |
0.0083 |
|
33880_at |
ACSL3 |
00900 |
Terpenoid biosynthesis |
0.441 |
0.0119 |
|
40623_at |
UBE3B |
00900 |
Terpenoid biosynthesis |
0.422 |
0.0093 |
|
33423_g_at |
SEC13 |
03050 |
Proteasome |
0.411 |
0.0089 |
|
37891_at |
YIPF6 |
00900 |
Terpenoid biosynthesis |
0.408 |
0.0105 |
|
41159_at |
CLTC |
00900 |
Terpenoid biosynthesis |
0.408 |
0.0193 |
|
35845_at |
SEC24B |
00900 |
Terpenoid biosynthesis |
0.405 |
0.0179 |
|
32051_at |
ALG8 |
00900 |
Terpenoid biosynthesis |
0.397 |
0.0139 |
|
39336_at |
ARF3 |
00900 |
Terpenoid biosynthesis |
0.385 |
0.0131 |
|
40115_at |
ATP5C1 |
03050 |
Proteasome |
0.384 |
0.0138 |
|
38811_at |
ATIC |
03050 |
Proteasome |
0.378 |
0.0188 |
|
40411_at |
NCOA6 |
00900 |
Terpenoid biosynthesis |
0.377 |
0.0117 |
|
1985_s_at |
NME1 |
03050 |
Proteasome |
0.369 |
0.0073 |
|
35760_at |
ATP5H |
03050 |
Proteasome |
0.356 |
0.0178 |
|
35290_at |
YTHDF3 |
00900 |
Terpenoid biosynthesis |
0.348 |
0.0033 |
|
40605_at |
SNX4 |
00900 |
Terpenoid biosynthesis |
0.348 |
0.0163 |
|
|
|||||
|
High-ranking gene-pathway pairs in lung data, sorted by descending SGPC. Affymetrix ID, gene symbol, KEGG pathway ID, and pathway description are given, along with the GPC-scores; p values are based on a permutation test with 104 resamplings. *The 326_i_at-Ribosome pair was included in the analysis due to the absence of annotation data for 326_i_at, but is correcly identified by the analysis as related; see the Results section. |
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|
Braun et al. BMC Bioinformatics 2008 9:488 doi:10.1186/1471-2105-9-488 |
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