CellProfiler Analyst: data exploration and analysis software for complex image-based screens

doi:10.1186/1471-2105-9-482

BMC Bioinformatics

Volume 9

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Jones TR
Kang IH
Wheeler DB
Lindquist RA
Papallo A
Sabatini DM
Golland P
Carpenter AE

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Kang IH
Wheeler DB
Lindquist RA
Papallo A
Sabatini DM
Golland P
Carpenter AE
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CellProfiler Analyst: data exploration and analysis software for complex image-based screens

Thouis R Jones¹^,2^,3 , In Han Kang³ , Douglas B Wheeler² , Robert A Lindquist² , Adam Papallo¹^,2 , David M Sabatini²^,4 , Polina Golland³ and Anne E Carpenter¹^,2

¹Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA

²Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA

³Computer Sciences and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02142, USA

⁴Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA

author email corresponding author email

BMC Bioinformatics 2008, 9:482doi:10.1186/1471-2105-9-482


Published:	15 November 2008

Additional files

Additional file 1:

Features tested to identify the best for constructing the metaphase and telophase gates.

Format: XLS Size: 36KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

List of all genes tested, with scores for metaphase and telophase nuclei enrichment.

Format: XLS Size: 926KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Source code for CellProfiler Analyst (most recent version is available at http://www.cellprofiler.org webcite). Additional File 3 must be uncompressed. Doubleclicking the file often activates the computer's native decompression software; otherwise download free software online (e.g., StuffIt Expander) for this purpose.

Format: ZIP Size: 319KB Download file