Table 4

Comparison of experiment arrays results using R/Bioconductor and dChip implementation
probe set
 Gene Name
 GCRMA
 RMA
 dChip Linux
33304_at
 interferon stimulated gene 20 kDa
 3196.51
 2268.74
 2244.54
823_at
 chemokine (C-X3-C motif) ligand 1
 94.32
 199.31
 303.39
200606_at
 desmoplakin (DPI, DPII)
 346.10
 472.57
 459.07
202269_x_at
 guanylate binding protein 1
 9812.82
 4339.89
 3651.44
202270_at
 guanylate binding protein 1
 6437.35
 2278.30
 2282.05
202687_s_at
 tumor necrosis factor member 10
 2156.88
 1550.21
 2133.03
202688_at
 tumor necrosis factor member 10
 7854.88
 3398.70
 3309.36
202748_at
 guanylate binding protein 2, interferon-inducible
 2345.96
 1250.53
 1007.71
202869_at
 2',5'-oligoadenylate synthetase 1
 3531.07
 2325.40
 3112.07
203148_s_at
 tripartite motif-containing 14
 2521.04
 1435.02
 1774.94
203153_at
 interferon-induced protein
 15412.19
 8556.41
 6863.81
203236_s_at
 lectin, galactoside-binding, soluble, 9
 1711.84
 847.55
 1540.56
203595_s_at
 retinoic acid- and interferon-inducible protein
 2012.55
 2181.61
 2144.76
204070_at
 retinoic acid receptor responder 3
 211.37
 292.39
 314.03
204439_at
 chromosome 1 open reading frame 29
 3293.52
 2515.21
 1982.76
204533_at
 chemokine (C-X-C motif) ligand 10
 3827.84
 3009.14
 3018.77
204769_s_at
 transporter 2, ATP-binding cassette
 351.22
 608.05
 971.37
204972_at
 2'-5'-oligoadenylate synthetase 2
 2566.06
 1918.87
 2173.07
204994_at
 myxovirus (influenza virus) resistance 2
 1879.30
 1864.21
 2312.15
205660_at
 2'-5'-oligoadenylate synthetase-like
 2757.19
 3007.87
 2793.93
206271_at
 toll-like receptor 3
 572.08
 560.92
 905.37
206503_x_at
 promyelocytic leukemia
 737.59
 913.65
 910.07
206553_at
 2'-5'-oligoadenylate synthetase 2
 315.50
 323.83
 873.65
207375_s_at
 interleukin 15 receptor, alpha
 438.00
 1020.22
 1114.76
207928_s_at
 glycine receptor, alpha 3
 8.43
 14.61
 2.37
208012_x_at
 SP110 nuclear body protein
 4220.13
 2720.23
 2436.07
208392_x_at
 SP110 nuclear body protein
 347.25
 510.43
 842.89
208436_s_at
 interferon regulatory factor 7
 2270.19
 2097.07
 3397.64
209546_s_at
 apolipoprotein L, 1
 1379.27
 915.53
 2170.99
209969_s_at
 signal transducer and activator of transcription 1
 3157.23
 2027.40
 1642.44
210029_at
 indoleamine-pyrrole 2,3 dioxygenase
 833.17
 1133.97
 814.88
210163_at
 chemokine (C-X-C motif) ligand 11
 4702.03
 2094.38
 2400.30
210797_s_at
 2'-5'-oligoadenylate synthetase-like
 3022.68
 2622.26
 2210.17
210846_x_at
 tripartite motif-containing 14
 20.39
 70.48
 139.55
211013_x_at
 promyelocytic leukemia
 952.73
 861.97
 891.32
211122_s_at
 chemokine (C-X-C motif) ligand 11
 6782.66
 2521.40
 2835.46
213261_at
 KIAA0342 gene product
 184.92
 481.56
 598.16
213716_s_at
 secreted and transmembrane 1
 924.99
 1132.93
 1844.02
213797_at
 vipirin
 9384.39
 4037.25
 4883.14
214038_at
 chemokine (C-C motif) ligand 8
 131.65
 153.26
 209.79
214059_at
 interferon-induced protein 44
 460.99
 417.83
 417.94
214329_x_at
 ESTs
 1651.68
 566.67
 2344.63
218400_at
 2'-5'-oligoadenylate synthetase 3
 1914.27
 2042.07
 1695.06
219011_at
 pleckstrin homology domain
 33.03
 216.27
 462.15
219364_at
 likely ortholog of mouse D11lgp2
 23.39
 211.10
 828.68
219593_at
 peptide transporter 3
 678.07
 754.28
 1005.54
219684_at
 28 kD interferon responsive protein
 678.29
 651.96
 792.34
219691_at
 hypothetical protein FLJ20073
 1761.43
 914.96
 1068.37
219863_at
 cyclin-E binding protein 1
 2191.56
 1844.42
 2329.30
220104_at
 likely ortholog of rat zinc-finger antiviral protein
 500.61
 427.62
 547.91
221087_s_at
 apolipoprotein L, 3
 1873.08
 1325.73
 1547.18
221371_at
 tumor necrosis factor member 18
 787.94
 1269.50
 821.30
221653_x_at
 apolipoprotein L, 2
 520.21
 609.52
 1495.00

Corradi et al. BMC Bioinformatics 2008 9:480   doi:10.1186/1471-2105-9-480