Table 1

File extensions for CoCoNUT output and their semantics

extension

file contents

.chn

chains

.ccn

chain boundaries without fragments

.stc

statistics about the fragments and the chains

.align

alignment of the chains on a character level

.filtered

filtered chains

.ps

2D plots of the results in PostScript format

Abouelhoda et al. BMC Bioinformatics 2008 9:476   doi:10.1186/1471-2105-9-476