Table 4 |
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|
Gene-finding performance for D. melanogaster genes with D. pseudoobscura EST evidence. |
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|
Gene |
Transcript |
Exon |
||||||||||||
|
|
||||||||||||||
|
ALL |
initial |
internal |
terminal |
single |
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|
|
||||||||||||||
|
sn% |
sp% |
sn% |
sp% |
sn% |
sp% |
sn% |
sp% |
sn% |
sp% |
sn% |
sp% |
sn% |
sp% |
|
|
|
||||||||||||||
|
Evigan-5g |
71.0 |
74.6 |
59.2 |
74.64 |
78.1 |
88.9 |
72.0 |
86.3 |
81.8 |
90.0 |
77.9 |
90.0 |
81.4 |
89.2 |
|
|
||||||||||||||
|
ReRanker-5g |
75.6 |
79.4 |
63.2 |
79.4 |
79.4 |
91.2 |
74.0 |
88.8 |
82.5 |
92.7 |
79.8 |
91.8 |
81.8 |
89.6 |
|
|
||||||||||||||
|
Performance on the 1191 D. melanogaster loci whose putative orthologs on D. pseudoobscura are supported by EST sequences (see text for details). Note that ReRanker-5g improves on Evigan-5g across the board (improvement indicated by bold). |
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|
Liu et al. BMC Bioinformatics 2008 9:433 doi:10.1186/1471-2105-9-433 |
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