Table 2 |
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|
Discriminating experimental complexes from threaded models |
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|
Superfamily identifiers |
Superfamily names |
sequence Id ranges (%) |
number of complexes |
number of tests |
number of successesa |
|
|
DFIREβ |
Launay |
|||||
|
|
||||||
|
a.133.1 |
Phospholipase A2 |
33–99 |
11 |
110 |
77 |
62 |
|
d.17.4 |
NTF2-like |
11–98 |
13 |
156 |
140 |
92 |
|
b.29.1 |
lectins |
33–99 |
15 |
210 |
205 |
148 |
|
c.61.1 |
Ribosyltransferase |
15–99 |
10 |
90 |
80 |
65 |
|
e.3.1 |
β lactamase-like |
9–100 |
11 |
110 |
107 |
59 |
|
d.5.1 |
RNase A-like |
25–94 |
6 |
30 |
26 |
17 |
|
c.2.1 |
Rossmann-fold |
11–43 |
14 |
182 |
174 |
152 |
|
a.118.6 a.102.4 |
Prenylyltransferase |
94–99 |
8 |
56 |
56 |
27 |
|
RhoGDI/Ras |
54–94/73–100 |
4 |
12 |
11 |
6 |
|
|
FGF receptor/FGF |
20–35/22–62 |
3 |
6 |
6 |
6 |
|
|
Trypsin/inhibitor |
30–100/10–100 |
12 |
132 |
127 |
87 |
|
|
Trypsin/inhibitor |
65–83/56–71 |
3 |
6 |
4 |
1 |
|
|
Peptidase M10/TIMP |
42–98/50–100 |
3 |
6 |
4 |
6 |
|
|
Trypsin/inhibitor |
14/98 |
2 |
2 |
2 |
1 |
|
|
Trypsin/inhibitor |
39/42 |
2 |
2 |
2 |
0 |
|
|
Collicin, Pyocin/HNH |
39/42 |
2 |
2 |
2 |
1 |
|
|
Elongation factor/EF-TS |
20–57/6–22 |
4 |
12 |
12 |
7 |
|
|
Total |
123 |
1124 |
1035 |
737 |
||
|
|
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|
aThe number of tests giving a positive Sthread score. Both the 6-class, residue-based and the DFIREβ, atom-based were used for scoring. |
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|
Launay and Simonson BMC Bioinformatics 2008 9:427 doi:10.1186/1471-2105-9-427 |
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