Methodology article
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
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* Corresponding author: Markus Ringnér markus.ringner@med.lu.se
1 Department of Oncology, Clinical Sciences, Lund University, SE-22185 Lund, Sweden
2 CREATE Health Strategic Centre for Clinical Cancer Research, Lund University, SE-22184 Lund, Sweden
3 Lund Strategic Research Center for Stem Cell Biology and Cell Therapy, Lund University, SE-22184 Lund, Sweden
4 Department of Genetics and Pathology, Uppsala University, SE-75185 Uppsala, Sweden
BMC Bioinformatics 2008, 9:409 doi:10.1186/1471-2105-9-409
Published: 2 October 2008Additional files
Additional file 1:
Supplementary figures. This file contains supplementary figures on the effect of BAF asymmetry on downstream analysis, a comparison of CN estimates before and after tQN, and a comparison of BAF asymmetry for regions of allelic imbalance before and after tQN.
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