Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
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* Corresponding author: Markus Ringnér markus.ringner@med.lu.se
BMC Bioinformatics 2008, 9:409 doi:10.1186/1471-2105-9-409
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Batch effect correction for genome-wide methylation data with Illumina Infinium platform Zhifu Sun, High Chai, Yanhong Wu, Wendy M White, Krishna V Donkena, Christopher J Klein, Vesna D Garovic, Terry M Therneau, Jean-Pierre A Kocher BMC Medical Genomics 2011, 4:84 (16 December 2011) |
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Christopher Yau, Dmitri Mouradov, Robert N Jorissen, Stefano Colella, Ghazala Mirza, Graham Steers, Adrian Harris, Jiannis Ragoussis, Oliver Sieber, Christopher C Holmes Genome Biology 2010, 11:R92 (21 September 2010) OncoSNP is a method for detecting CNVs in tumors from SNP array data that can account for contaminating healthy tissue.
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Data analysis issues for allele-specific expression using Illumina's GoldenGate assay Matthew E Ritchie, Matthew S Forrest, Antigone S Dimas, Caroline Daelemans, Emmanouil T Dermitzakis, Panagiotis Deloukas, Simon Tavaré BMC Bioinformatics 2010, 11:280 (26 May 2010) |
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The pitfalls of platform comparison: DNA copy number array technologies assessed Christina Curtis, Andy G Lynch, Mark J Dunning, Inmaculada Spiteri, John C Marioni, James Hadfield, Suet-Feung Chin, James D Brenton, Simon Tavaré, Carlos Caldas BMC Genomics 2009, 10:588 (8 December 2009) |