BMC Bioinformatics

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Presenting and exploring biological pathways with PathVisio

Martijn P van Iersel*, Thomas Kelder, Alexander R Pico, Kristina Hanspers, Susan Coort, Bruce R Conklin and Chris Evelo

BMC Bioinformatics 2008, 9:399 doi:10.1186/1471-2105-9-399

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BioMed Central: 5 citations

Research article   Open Access

Proteomic analysis of acquired tamoxifen resistance in MCF-7 cells reveals expression signatures associated with enhanced migration

Changhua Zhou, Qiu Zhong, Lyndsay V Rhodes, Ian Townley, Melyssa R Bratton, Qiang Zhang, Elizabeth C Martin, Steven Elliott, Bridgette M Collins-Burow, Matthew E Burow, Guangdi Wang Breast Cancer Research 2012, 14:R45 (14 March 2012)

Method   Open Access Highly Accessed

NetPath: a public resource of curated signal transduction pathways

Kumaran Kandasamy, S Sujatha Mohan, Rajesh Raju, Shivakumar Keerthikumar, Ghantasala Kumar, Abhilash K Venugopal, Deepthi Telikicherla, J Daniel Navarro, Suresh Mathivanan, Christian Pecquet, Sashi Gollapudi, Sudhir Tattikota, Shyam Mohan, Hariprasad Padhukasahasram, Yashwanth Subbannayya, Renu Goel, Harrys KC Jacob, Jun Zhong, Raja Sekhar, Vishalakshi Nanjappa, Lavanya Balakrishnan, Roopashree Subbaiah, YL Ramachandra, B Abdul Rahiman, TS Keshava Prasad, Jian-Xin Lin, Jon CD Houtman, Stephen Desiderio, Jean-Christophe Renauld, Stefan N Constantinescu et al. Genome Biology 2010, 11:R3 (12 January 2010)

NetPath, a novel community resource of curated human signaling pathways is presented and its utility demonstrated using immune signaling data.

Software   Open Access

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

Martijn P van Iersel, Alexander R Pico, Thomas Kelder, Jianjiong Gao, Isaac Ho, Kristina Hanspers, Bruce R Conklin, Chris T Evelo BMC Bioinformatics 2010, 11:5 (4 January 2010)

Proceedings   Open Access

HPD: an online integrated human pathway database enabling systems biology studies

Sudhir R Chowbina, Xiaogang Wu, Fan Zhang, Peter M Li, Ragini Pandey, Harini N Kasamsetty, Jake Y Chen BMC Bioinformatics 2009, 10(Suppl 11):S5 (8 October 2009)

Research   Open Access

Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria

Dennis Prickett, Michael Watson BMC Proceedings 2009, 3(Suppl 4):S7 (16 July 2009)