Table 2

AutoSCOP comparison.

Method

Covered

Uncovered

Total

AutoSCOP

7

18

25

SVM

3

62

65

PSI-BLAST

6

24

30

SVM → PSI-BLAST

4

40

44

PSI-BLAST → SVM

3

24

27

Total

38

62

100

Each entry in the table is the number of proteins from a test set of 100 proteins taken from SCOP.1.73 that are assigned to the incorrect superfamily by the given method. Each superfamily is "covered" or "uncovered," depending on whether an SVM has been trained to recognize it.

Melvin et al. BMC Bioinformatics 2008 9:389   doi:10.1186/1471-2105-9-389