|
Parameters used to generate simulated data for the 5 cases tested |
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| Class T |
Class N |
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|
|
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| Number of Samples |
Mean |
Stdev* |
Number of Samples |
Mean |
Stdev* |
|
|
|
||||||
| Case 1 |
10 |
250 |
50 |
10 |
100 |
30 |
| Case 2 |
10 |
250 |
100 |
10 |
200 |
100 |
| Case 3 |
3 |
900 |
100 |
10 |
100 |
30 |
| 7 |
100 |
50 |
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| Case 4 |
3 |
400 |
50 |
5 |
100 |
30 |
| 3 |
300 |
50 |
5 |
130 |
30 |
|
| 4 |
100 |
30 |
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| Case 5 |
3 |
900 |
100 |
7 |
100 |
30 |
| 7 |
100 |
50 |
3 |
400 |
100 |
|
|
* Standard deviation Parameters for the normal distributions used are indicated only for the 1000 differentially expressed genes. Data for the 9000 non differentially expressed genes is simulated using a mean of 100 and standard deviation of 30. Expression levels of samples for each case (for a representative example) are indicated in Figure 2A in the form of a heatmap | ||||||
Gadgil BMC Bioinformatics 2008 9:380 doi:10.1186/1471-2105-9-380 |
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