Table 3

List of query sequences used in different performance comparisons

Accession number

Query Sequence Length

Comparison w/SSEARCH

Comparison w/Striped SW

Comparison w/CUDA


O29181

63

P03630

127

P02232

143

P05013

189

P14942

222

P00762

246

P53765

255

Q8ZGB4

361

P10318

362

P07327

374

P01008

464

P10635

497

P58229

511

P25705

553

P42357

657

P21177

729

Q38941

850

O60341

852


List of query sequences, as well as their respective accession number, used in different performance comparisons with other publicly available implementations of SW-based protein database scanning, namely SSEARCH, Striped Smith-Waterman and CUDA.

Wirawan et al. BMC Bioinformatics 2008 9:377   doi:10.1186/1471-2105-9-377

Open Data