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ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)

Thomas D Otto*, Leonardo HF Gomes, Marcelo Alves-Ferreira, Antonio B de Miranda and Wim M Degrave

BMC Bioinformatics 2008, 9:366 doi:10.1186/1471-2105-9-366

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What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

David A Rasmussen, Mohamed AF Noor BMC Genomics 2009, 10:382 (18 August 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

Random pyrosequencing of approximately 10% of the scuttle fly genome yielded novel repetitive elements, a near-complete mitochondrial genome sequence and microsatellite markers, showing that inexpensive low-coverage screens can provide useful data on non-model organisms.

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