Table 1

Overview of results from slow-fast analysis of Blastocystis alignment

Dataset

Posit.

Length

1a

1b

2a

2b

ML

MP

LD

MD

ML

MP

LD

MD

ML

MP

LD

MD

ML

MP

LD

MD

Untr.

1471

1289

92

99

54

58

50

33

46

35

S8

1467

1250

93

99

51

54

45

30

34

43

S7

1460

1187

57

96

99

54

42

34

36

37

S6

1452

1121

62

96

99

48

48

35

38

38

S5

1438

1026

61

91

97

55

54

42

34

35

S4

1407

844

63

87

99

73

57

36

45

36

S3

1371

674

59

82

97

85

-

38

67

73

-

S2

1330

522

68

75

98

97

-

30

64

64

-

S1

1258

343

49

92

90

71

-

-

90

76

-

-

S0

1097

124

For each dataset (the first column) ranging from untreated initial alignment (Untr.) to alignment BlastoS0, the number of alignment positions (Posit.) and the length of the most parsimonious tree (Length) are noted in the second and third columns, respectively. In the remaining columns is given the bootstrap support from the four tree reconstructing methods for four topologies of interest. In some cases (marked with a dash) the method was unable to decide between the given node and its alternative.

Kostka et al. BMC Bioinformatics 2008 9:341   doi:10.1186/1471-2105-9-341