Table 4 |
||||
|
Summary of most abundant merged and non-merged OPFs from the AMD, soil, and whalebone communities. |
||||
|
Number of ORFs in OPF |
Putative annotation |
Representative GenBank Accession |
||
|
|
||||
|
AMD |
Soil |
Whale |
||
|
|
||||
|
Merged OPFs |
||||
|
|
||||
|
562 |
350 |
451 |
Acetate CoA ligase |
|
|
1628 |
1515 |
1240 |
Diguanylate cyclase signal protein |
|
|
796 |
1226 |
1086 |
ABC transporter |
|
|
371 |
163 |
138 |
Resistance protein |
|
|
216 |
121 |
152 |
Dehydrogenase |
|
|
238 |
237 |
236 |
Cation transporting ATPase |
|
|
237 |
170 |
269 |
Dehydrogenase |
|
|
476 |
282 |
318 |
Translocation elongation factor |
|
|
123 |
125 |
156 |
DNA helicase |
|
|
169 |
184 |
289 |
Acyl CoA dehyodrogenase |
|
|
|
||||
|
Non-merged OPFs |
||||
|
|
||||
|
22 |
7 |
5 |
Urocanate hydratase |
|
|
18 |
5 |
13 |
DNA gyrase, A subunit |
|
|
17 |
9 |
12 |
Nucleoside-diphosphate kinase |
|
|
11 |
13 |
14 |
Nitrogen regulatory protein PII |
|
|
10 |
10 |
10 |
50S ribosomal protein, L19 |
|
|
9 |
12 |
9 |
GTP-binding protein LepA |
|
|
7 |
11 |
14 |
50S ribosomal protein, L20 |
|
|
8 |
10 |
9 |
Excinuclease ATPase subunit |
|
|
6 |
10 |
11 |
GMP synthase |
|
|
5 |
13 |
10 |
30S ribosomal protein, S13 |
|
|
|
||||
|
Schloss and Handelsman BMC Bioinformatics 2008 9:34 doi:10.1186/1471-2105-9-34 |
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