Table 5 |
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|
Significant pairs in chromosome data |
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|
chr |
TF 1 |
TF 2 |
# TF 1 |
# TF 2 |
C |
num |
FL |
ref |
|
|
||||||||
|
1 |
MA0042, FOXI1 |
MA0045, HMG-IY |
1656 |
3958 |
550 |
10 |
Y |
|
|
1 |
MA0041, Foxd3 |
MA0045, HMG-IY |
1643 |
3958 |
547 |
10 |
Y |
|
|
9 |
MA0045, HMG-IY |
MA0119, TLX1-NFIC |
3771 |
985 |
458 |
7 |
Y |
|
|
2 |
MA0073, RREB1 |
MA0079, SP1 |
1968 |
447 |
317 |
6 |
Y |
[16] |
|
1 |
MA0045, HMG-IY |
MA0088, Staf |
3958 |
583 |
180 |
4 |
Y |
|
|
9 |
MA0045, HMG-IY |
MA0137, STAT1 |
3771 |
642 |
173 |
3 |
Y |
|
|
4 |
MA0045, HMG-IY |
MA0079, SP1 |
2661 |
744 |
170 |
2 |
Y |
[17] |
|
9 |
MA0042, FOXI1 |
MA0119, TLX1-NFIC |
1439 |
985 |
170 |
4 |
Y |
|
|
6 |
MA0045, HMG-IY |
MA0082, SQUA |
4029 |
579 |
164 |
2 |
N |
|
|
9 |
MA0003, TFAP2A |
MA0073, RREB1 |
856 |
1756 |
131 |
4 |
Y |
[18] |
|
1 |
MA0029, Evi1 |
MA0045, HMG-IY |
856 |
1756 |
131 |
4 |
Y |
|
|
4 |
MA0045, HMG-IY |
MA0112, ESR1 |
465 |
3958 |
129 |
2 |
Y |
[19] |
|
9 |
MA0041, Foxd3 |
MA0119, TLX1-NFIC |
2661 |
605 |
121 |
1 |
N |
|
|
9 |
MA0022, dl_1 |
MA0045, HMG-IY |
1162 |
985 |
118 |
4 |
Y |
|
|
1 |
MA0045, HMG-IY |
MA0049, hb |
365 |
3771 |
110 |
4 |
Y |
|
|
9 |
MA0003, TFAP2A |
MA0123, ABI4 |
3958 |
387 |
110 |
1 |
N |
|
|
4 |
MA0073, RREB1 |
MA0123, ABI4 |
856 |
355 |
107 |
10 |
Y |
|
|
4 |
MA0045, HMG-IY |
MA0048, NHLH1 |
1971 |
303 |
103 |
4 |
Y |
|
|
4 |
MA0079, SP1 |
MA0119, TLX1-NFIC |
744 |
1013 |
102 |
1 |
Y |
|
|
6 |
MA0073, RREB1 |
MA0138, REST |
1868 |
615 |
100 |
1 |
Y |
|
|
|
||||||||
|
The significant pairs (p ≤ 0.001) in chromosome data with the highest C scores. The parameters used are w = 300 bp, minimum distance d = 20 bp, and significance is determined according to the FL(r) null model for the C score. There are in total 241 unique significant pairs in chromosomes 1–10 with these parameters. The chromosome where the C score is highest, and the total number of times that each TF occurs in the corresponding chromosome are given, as well as the C score. The following two columns state the number of chromosomes (1–10) in which the pair is significant, and if the pair is significant according to the FL null model. The last column gives a reference when one exists. Additional file 2 contains the full names of the factors. |
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|
Haiminen et al. BMC Bioinformatics 2008 9:336 doi:10.1186/1471-2105-9-336 |
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