Research article
Determining significance of pairwise co-occurrences of events in bursty sequences
-
* Corresponding authors: Niina Haiminen niina.haiminen@cs.helsinki.fi - Heikki Mannila heikki.mannila@tkk.fi
1 HIIT, Department of Computer Science, P.O. Box 68, FI-00014 University of Helsinki, Finland
2 HIIT, Laboratory of Computer and Information Science, Helsinki University of Technology, FI-02015 TKK, Finland
3 IBM Almaden Research Center, 650 Harry Road, San Jose, CA 95120, USA
4 This work was mostly done while the author was at HIIT, University of Helsinki, Finland
BMC Bioinformatics 2008, 9:336 doi:10.1186/1471-2105-9-336
Published: 8 August 2008Additional files
Additional file 1:
Significant pairs. Significant pairs according to the FL and FL(r) null models and C score in 10 Mbp regions from chromosome 1–10, with window length w = 300, minimum distance d = 20, and empirical p-value p ≤ 0.001. Each row contains the following 5 columns: chromosome, TF 1 (e.g., 45 corresponds to Jaspar matrix MA0045), TF 2, C score, 0 if the pair (TF 1, TF 2) is significant according to FL, or 1 if it is significant according to FL(r). The matrix names are available from the Jaspar database download page: http:/ / jaspar.genereg.net/ html/ DOWNLOAD/ MatrixDir/ JASPAR_CORE_2008/ matrix_list.txt webcite
Format: TXT Size: 15KB Download file
Additional file 2:
Full names of TFs in Table 5. The full names of transcription factors appearing in Table 5.
Format: TXT Size: 1KB Download file