GBParsy: A GenBank flatfile parser library with high speed

doi:10.1186/1471-2105-9-321

BMC Bioinformatics

Volume 9

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GBParsy: A GenBank flatfile parser library with high speed

Tae-Ho Lee¹^,2 , Yeon-Ki Kim² and Baek Hie Nahm¹^,2

¹Division of Bioscience and Bioinformatics, MyongJi University, Yongin, Kyonggido, Republic of Korea

²Genomics Genetics Institute, GreenGene BioTech Inc., Yongin, Kyonggido, Republic of Korea

author email corresponding author email

BMC Bioinformatics 2008, 9:321doi:10.1186/1471-2105-9-321


Published:	25 July 2008

Additional files

Additional file 1:

GBParsy (and GBParsyPy) version 0.60. This compressed file contains GBParsy and GBParsyPy source codes and additional files such as example programs and instruction for installation. The latest version is available at GBParsy homepage http://code.google.com/p/gbfp/ webcite.

Format: TGZ Size: 21KB Download file

Additional file 2:

Diagram of Arabidopsis chromosome 1–5. The diagrams were drawn by ChrDiagram, in which sequence data were parsed by GBParsyPy and handled with GenomeDiagram. An orchid bar, orange red bar and olive bar on the 1st, 2nd and 3rd track denote a gene, a tRNA and a miscellaneous feature such as transposable element, respectively.

Format: ZIP Size: 446KB Download file