Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

doi:10.1186/1471-2105-9-288

BMC Bioinformatics

Volume 9

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Research article

Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

Jianchao Yao¹ , Chunqi Chang² , Mari L Salmi³ , Yeung Sam Hung² , Ann Loraine⁴ and Stanley J Roux³

¹Institute for Cellular and Molecular Biology and Department of Mathematics, University of Texas at Austin, Austin, Texas 78712, USA

²Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, PR China

³Section of Molecular Cell and Developmental Biology, University of Texas at Austin, Austin, Texas 78712, USA

⁴Bioinformatics Research Center, University of North Carolina at Charlotte, Charlotte, NC 28223, USA

author email corresponding author email

BMC Bioinformatics 2008, 9:288doi:10.1186/1471-2105-9-288


Published:	18 June 2008

Additional files

Additional file 1:

Data set showing time course of transcript abundance changes during germination of C. richardii spores for identification of ten samples that might be associated with systematic biases by one-dimensional hierarchical array clustering and SVD.

Format: TXT Size: 217KB Download file

Additional file 2:

Supporting data analysis for C. richardii microarray quality control.

Format: DOC Size: 111KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 3:

Data set showing time course of transcript abundance changes during germination of C. richardii spores for identification of the gene-wise bias by SVD.

Format: TXT Size: 182KB Download file

Additional file 4:

Data set showing time course of transcript abundance changes during germination of C. richardii spores for SCC-based clustering analysis.

Format: TXT Size: 208KB Download file