Research article  

RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Zhen Li, Zhonghua Zhang, Pengcheng Yan, Sanwen Huang, Zhangjun Fei, Kui Lin BMC Genomics 2011, 12:540 (2 November 2011)

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Research article  

A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function

Christian Eckert, Björn Hammesfahr, Martin Kollmar BMC Evolutionary Biology 2011, 11:268 (25 September 2011)

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Research article  

Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio

Klas Hatje, Oliver Keller, Björn Hammesfahr, Holger Pillmann, Stephan Waack, Martin Kollmar BMC Research Notes 2011, 4:265 (28 July 2011)

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Research article  

Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology

Holger Pillmann, Klas Hatje, Florian Odronitz, Björn Hammesfahr, Martin Kollmar BMC Bioinformatics 2011, 12:270 (30 June 2011)

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Research article  

Evolution of spliceosomal introns following endosymbiotic gene transfer

Nahal Ahmadinejad, Tal Dagan, Nicole Gruenheit, William Martin, Toni Gabaldón BMC Evolutionary Biology 2010, 10:57 (23 February 2010)

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Software  

WebScipio: An online tool for the determination of gene structures using protein sequences

Florian Odronitz, Holger Pillmann, Oliver Keller, Stephan Waack, Martin Kollmar BMC Genomics 2008, 9:422 (18 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central