Table 4

Comparison of all the patterns with random patterns in terms of overlap with transport and signaling pathways

PPI Network

cpoverlap of Frequent Patterns

cpoverlap of Random Patterns

Mean

Standard Deviation

Mean

Standard Deviation

DIP

0.982

0.050

0.959

0.013

STRING

0.979

0.033

0.991

0.014

WI-PHI

0.982

0.043

0.948

0.017

The average cpoverlap measure for all the patterns discovered in DIP, STRING, and WI-PHI networks compared to the average cpoverlap measure of random patterns of same topology with respect to the transport and signaling pathways.

Turanalp and Can BMC Bioinformatics 2008 9:276   doi:10.1186/1471-2105-9-276