TileQC: A system for tile-based quality control of Solexa data
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* Corresponding author: Peter C Dolan dolanp@science.oregonstate.edu
BMC Bioinformatics 2008, 9:250 doi:10.1186/1471-2105-9-250
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Correspondence
Addressing challenges in the production and analysis of illumina sequencing data Martin Kircher, Patricia Heyn, Janet Kelso BMC Genomics 2011, 12:382 (29 July 2011) Janet Kelso and colleagues review the potential problems and suggested solutions for users of Illumina sequencers, including general principles for library preparation, image analysis, run parameters and handling of sequences containing adapter chimeras.
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Proceedings
NGSQC: cross-platform quality analysis pipeline for deep sequencing data Manhong Dai, Robert C Thompson, Christopher Maher, Rafael Contreras-Galindo, Mark H Kaplan, David M Markovitz, Gil Omenn, Fan Meng BMC Genomics 2010, 11(Suppl 4):S7 (2 December 2010) |
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Methodology article
Probabilistic base calling of Solexa sequencing data Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef BMC Bioinformatics 2008, 9:431 (13 October 2008) |