Dinucleotide controlled null models for comparative RNA gene prediction
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* Corresponding author: Stefan Washietl washietl@ebi.ac.uk
BMC Bioinformatics 2008, 9:248 doi:10.1186/1471-2105-9-248
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BioMed Central: 3 citations
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Proceedings
Robust and accurate prediction of noncoding RNAs from aligned sequences Yutaka Saito, Kengo Sato, Yasubumi Sakakibara BMC Bioinformatics 2010, 11(Suppl 7):S3 (15 October 2010) |
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Methodology article
RNAalifold: improved consensus structure prediction for RNA alignments Stephan H Bernhart, Ivo L Hofacker, Sebastian Will, Andreas R Gruber, Peter F Stadler BMC Bioinformatics 2008, 9:474 (11 November 2008) |
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Software
Tools for simulating evolution of aligned genomic regions with integrated parameter estimation Avinash Varadarajan, Robert K Bradley, Ian H Holmes Genome Biology 2008, 9:R147 (8 October 2008) Three tools for simulating genome evolution are presented: for neutrally evolving DNA, for phylogenetic context-free grammars and for richly structured syntenic blocks of genome sequence. |
