Table 4 |
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|
Predikin scores for two usage cases |
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|
Substrates for S. cerevisiae kinase CLA41 |
Kinases for S. pombe Rpb1 SPTSPSY2 |
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|
|
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|
Substrate |
Position |
Heptapeptide |
Score |
Kinase |
Score |
|
|
|||||
|
CLA4 |
727 |
KRATMVG |
92.93 |
NP_592843 |
86.62 |
|
YOL113W |
541 |
KRATMVG |
92.93 |
NP_594393 |
84.73 |
|
YHL021C |
129 |
KGSSFVS |
91.87 |
NP_595739 |
81.60 |
|
YKR010C |
527 |
KRNSITE |
91.70 |
NP_595616 |
81.60 |
|
YNL049C |
526 |
RATSFFG |
90.14 |
NP_595629 |
81.60 |
|
YDL056W |
477 |
KRKSTTP |
88.70 |
NP_587921 |
81.60 |
|
YOL157C |
527 |
KLFSFTK |
88.25 |
NP_596349 |
81.60 |
|
YBR198C |
157 |
RAYSMLK |
87.71 |
NP_595795 |
68.41 |
|
|
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|
1Top 8 Predikin scores (SDR method) from a set of 163 putative substrates for protein kinase CLA4 (UniProt accession P48562) from S. cerevisiae 2Top 8 Predikin scores (KSD method) for kinases at SPTSPSY repeats in substrate Rpb1 (UniProt accession P36594) from S. pombe |
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|
Saunders et al. BMC Bioinformatics 2008 9:245 doi:10.1186/1471-2105-9-245 |
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