Table 1 |
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|
Feature comparison of integrative analysis platforms |
||||||||||
|
MD-SeeGH |
VAMP/CAPweb |
ISACGH |
CGH Analytics |
CGHPRO |
CGH Explorer |
Blue Fuse |
ArrayCyGHt |
M-CGH |
SeeGHv1.6 |
|
|
|
||||||||||
|
Segmentation |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
||
|
Normalization |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
|||
|
ISCN Reporting |
✓ |
✓ |
||||||||
|
Integrative Analysis with Expression data |
✓ |
✓ |
✓ |
✓ |
✓ |
|||||
|
Multiple Sample Visualization |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
||||
|
Gene Tracks |
✓ |
✓ |
✓ |
✓ |
✓ |
|||||
|
Other Tracks (ie.miRNA, CNV, CpG island, etc.) |
✓ |
✓ |
||||||||
|
Links to external websites (ie. NCBI, UCSC, etc.) |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
||||
|
Mapping files (different Genomic Builds) |
✓ |
✓ |
✓ |
|||||||
|
Integration of third party analysis tools |
✓ |
✓ |
✓ |
✓ |
||||||
|
Frequency Plot |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
||||
|
Heatmap |
✓ |
✓ |
✓ |
✓ |
||||||
|
Group analysis |
✓ |
✓ |
✓ |
|||||||
|
Free public access |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
✓ |
|||
|
Data storage (samples only loaded once) |
✓ |
✓ |
✓ |
|||||||
|
Web based software |
✓ |
✓ |
✓ |
|||||||
|
References |
[6, 20] |
[21] |
[8] |
[1] |
[3] |
[7] |
[22] |
[5] |
[2] |
|
|
|
||||||||||
|
Chi et al. BMC Bioinformatics 2008 9:243 doi:10.1186/1471-2105-9-243 |
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