Estimating the size of the solution space of metabolic networks

doi:10.1186/1471-2105-9-240

BMC Bioinformatics

Volume 9

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Methodology article

Estimating the size of the solution space of metabolic networks

Alfredo Braunstein¹^,2 , Roberto Mulet³ and Andrea Pagnani²

¹Politecnico di Torino, Corso Duca degli Abruzzi 34, I-10129, Torino, Italy

²ISI Foundation Viale Settimio Severo 65, Villa Gualino, I-10133 Torino, Italy

³"Henri-Poincaré-Group" of Complex Systems and Department of Theoretical Physics, Physics Faculty, University of Havana, La Habana, CP 10400, Cuba

author email corresponding author email

BMC Bioinformatics 2008, 9:240doi:10.1186/1471-2105-9-240


Published:	19 May 2008

Additional files

Additional file 1:

Human red blood cell metabolism supplementary files. The archive contains 4 text files: rbc.sto (stoichiometric matrix where each column is a reaction and each line is a metabolite), rbc.flu (one column, contains the sign of exchange fluxes: negative are incoming positive outcoming, zero free), rbc.names (contains the name of both reactions and metabolites), and rbc.max (contains maximum flux values of the reactions).

Format: TGZ Size: 2KB Download file

Additional file 2:

E. coli central metabolism supplementary files. The archive contains 3 text files: central.sto (stoichiometric matrix where each column is a reaction and each line is a metabolite), central.flu (one column, contains the sign of exchange fluxes: negative are incoming, positive outcoming, zero free), central.names (contains the name of both reactions and metabolites).

Format: TGZ Size: 1KB Download file